Reengineering MRI Scanners

Research

Rebuilding the transmit, gradient and receive chains of a magnetic resonance imaging system, from the electromagnetic design down to the FPGA.

Cutaway of an MRI magnet showing the gradient array windings, a transmit array and a receive array around the patient's head
The three chains in one scanner. Orange: the gradient coil, wound as an array of independently driven channels. Green: the transmit array around the head. Blue: the receive array on the head. Illustration.

An MRI scanner is three chains of hardware working to one clock: a transmit chain that excites the spins, a gradient chain that encodes position, and a receive chain that recovers the signal. We are rebuilding all three, in our own laboratory, from the electromagnetics of the coil down to the register-transfer code in the FPGA.

The work divides naturally into a matrix. Each row is one of the three chains. Each column is a layer of engineering: the electromagnetic design that sets what is physically possible, the analog electronics that drive or amplify, the digital design that controls and captures, and the safety work that decides how hard any of it may be pushed with a person inside. Each of the twelve cells has its own people, its own instruments and its own open questions.

Spectrometer one sequence engine for all three chains, one clock Reengineering MRI Scanners Three hardware chains, four layers of engineering Electromagnetic Electronics Digital Design Safety RF Receiver Ultimate intrinsic SNR array coils, coupling → Low-noise preamplifier three parallel routes → Two-FPGA receiver IF to baseband, clock → Detuning coil heating → RF Transmitter Field models electric field probes → Class E array impedance transformation → Gate drive per-element phase → Local SAR implant heating → Gradient System Stream-function design arrays, eddy currents → Gradient amplifiers one per element → Array controller waveform mapping → Nerve stimulation encoding speed limit →
Click a cell, or use the list below.
Block diagram: the spectrometer drives the transmit, gradient and receive chains
Three hardware chains, one spectrometer. Each chain is a separate project; one sequence engine and one clock combine them.
A researcher probing an amplifier board at the electronics bench
At the UMRAM electronics bench.

Safety is a column rather than a footnote. In magnetic resonance the limit on performance is usually not the hardware but the person inside it: the electric field the gradients induce in tissue, the power the transmit coil deposits, the heat a receive element can produce if it fails to detune. Those limits are what the first three columns are designed against, so they are studied with the same instruments and by the same people.

Why rebuild rather than buy

A commercial scanner is a closed instrument. Its encoding fields are fixed by the winding pattern at manufacture, its receive chain is sealed, and its pulse programmer exposes only what the vendor chose to expose. Every question we want to ask sits below that surface. Building the hardware is what makes the questions askable.

Funding

The work is carried by several projects at once, and no single project maps onto a single cell of the matrix. A coil design and the amplifier that drives it are usually funded differently, and a student paid by one project often works across two columns.

ProjectProgrammeSubject
125E832TUBITAK 1001Eddy currents, with gradient arrays. 2026–2029.
23AG005TUBITAK 1004Neurotechnology Solutions Platform, Bilkent/UMRAM component.
125C001TUBITAK 2247-BSupport for the European Research Council application.
101078393EU HorizonMRITwins. Partnership and exchange with European laboratories.

Two further applications are under evaluation and are not listed here until there is an outcome.

What ties the twelve cells together

The three chains are separate projects with separate repositories, and they are combined operationally through a common spectrometer that acts as the sequence engine. The receiver, the transmitter and the gradient controller each present the same kind of interface to it.