{"id":9,"date":"2023-11-09T14:38:14","date_gmt":"2023-11-09T14:38:14","guid":{"rendered":"https:\/\/erginatalarlab.bilkent.edu.tr\/?page_id=9"},"modified":"2025-12-25T08:02:06","modified_gmt":"2025-12-25T08:02:06","slug":"publiications","status":"publish","type":"page","link":"https:\/\/erginatalarlab.bilkent.edu.tr\/?page_id=9","title":{"rendered":"Publications"},"content":{"rendered":"\n

130. Ozkara, D., Yazici, I., Mahmoudalilou, E. M., Brunheim, S., DelaBarre, L, Stoecker, T., Eryaman, Y., and Atalar, E., EM Simulation Model of a Clinically-Used RF Head Coil at 7 T<\/em><\/strong>, in Magnetic Resonance in Medicine, 2026, Early view. doi: https:\/\/doi.org\/10.1002\/mrm.70244<\/a>.<\/p>\n\n\n\n

129<\/strong>. Takrimi, M. and Atalar, E., Eddy Current Compensation for Gradient Array Coils with Explicit Eddy Loss Constraints on the Cryostat: An Electromagnetic Approach<\/strong> in IEEE Trans. Medical Imaging, 2025<\/strong>, vol. 44, no. 11, pp. 4432-4444, Nov. 2025, https:\/\/doi.org\/10.1109\/TMI.2025.3575201<\/p>\n\n\n\n

128<\/strong>. Kazemivalipour E., and Atalar, E., Enhancing fine-tuning efficiency and design optimization of an eight-channel 3T transmit array via equivalent circuit modeling and Eigenmode analysis<\/strong> in Medical Physics<\/em> 2025<\/strong>, 1-15 DOI: <\/strong>https:\/\/doi.org\/10.1002\/mp.17612<\/a><\/p>\n\n\n\n

127<\/strong>. Babaloo R., and Atalar, E., Minimizing Electric Fields and Increasing Peripheral Nerve Stimulation Thresholds Using a Body Gradient Array Coil<\/strong> in Magn Reson Med<\/em>. 2024; 92(3): 1290-1305. DOI: <\/strong>https:\/\/doi.org\/10.1002\/mrm.30109<\/a><\/p>\n\n\n\n

126. <\/strong>Takrimi, M. and Atalar, E., Minimization of Eddy Power Loss in the Cryostat for a Z-Gradient Array Coil Driven by an Arbitrary Pulse Sequence: An Electromagnetic Approach<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2024<\/strong>, 91(3), 1225:1238. https:\/\/doi.org\/10.1002\/mrm.29921<\/a><\/p>\n\n\n\n

125. <\/strong>Kazemivalipour, E., Sadeghi-Tarakameh, A., Keil, B., Eryaman,Y., Atalar E., Golestanirad, L., Effect of field strength on RF power deposition near conductive leads: A simulation study of SAR in DBS lead models during MRI at 1.5 T\u201410.5 T<\/em><\/strong> in PLOS One 2023<\/strong>, 18(1): e0280655  https:\/\/doi.org\/10.1371\/journal.pone.0280655<\/a>.<\/p>\n\n\n\n

124. <\/strong>Takrimi, M. and Atalar, E., A z\u2010gradient array coil with a dedicated active\u2010shielded array coil for MRI<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2022<\/strong>, 88 (6), 2718-2731. https:\/\/doi.org\/10.1002\/mrm.29390<\/a><\/p>\n\n\n\n

123. <\/strong>Babaloo, R. and Atalar, E., Nonlinear Droop Compensation for Current Waveforms in MRI Gradient Systems<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2022<\/strong>, 88: 973-985. https:\/\/doi.org\/10.1002\/mrm.29246<\/a><\/p>\n\n\n\n

122. <\/strong>Sadeghi-Tarakameh, A., Jungst, S., Lanagan, M., DelaBarre, L., Wu, X., Adriany, G., Metzger, G.J., Moortele, P.F.V.d., Ugurbil, K., Atalar, E. and Eryaman, Y., A nine-channel transmit\/receive array for spine imaging at 10.5 T: Introduction to a nonuniform dielectric substrate antenna<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2022<\/strong>, 87: 2074-2088. http:\/\/doi.org\/10.1002\/mrm.29096<\/p>\n\n\n\n

121. <\/strong>Sadeghi-Tarakameh, A., Zulkarnain, N.I.H., He, X., Atalar, E., Harel, N. and Eryaman, Y., A Workflow for Predicting Temperature Increase at the Electrical Contacts of Deep Brain Stimulation Electrodes Undergoing MRI<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2022<\/strong>, Nov;88(5):2311-2325. doi: 10.1002\/mrm.29375<\/p>\n\n\n\n

120. <\/strong>Ariyurek, C., Tasdelen, B., Ider, Y.Z. and Atalar, E., SNR Weighting for Shear Wave Speed Reconstruction in Tomoelastography<\/em><\/strong> in NMR<\/em> 2021<\/strong>, 34: e4413.<\/p>\n\n\n\n

119. <\/strong>Kazemivalipour, E., Sadeghi-Tarakameh, A. and Atalar, E., Eigenmode analysis of the scattering matrix for the design of MRI transmit array coils<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2021<\/strong>, 85: 1727-1741.<\/p>\n\n\n\n

118. <\/strong>Kazemivalipour, E., Bhusal, B., Vu, J., Lin, S., Nguyen, B.T., Kirsch, J., Nowac, E., Pilitsis, J., Rosenow, J., Atalar, E. and Golestanirad, L., Vertical open-bore MRI scanners generate significantly less RF heating around implanted leads: A study of deep brain stimulation implants in 1.2 T OASIS scanners versus 1.5 T horizontal systems<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2021<\/strong>, 8: 1560-1572.<\/p>\n\n\n\n

117. <\/strong>Sadeghi-Tarakameh, A., Kazemivalipour, E., Gundogdu, U., Erdogan, S. and Atalar, E., Accelerating the Co-Simulation Method for the Design of Transmit Array Coils for MRI<\/em><\/strong> in Magnetic Resonance Materials in Physics, Biology and Medicine<\/em> 2021<\/strong>, 34: 165-178.<\/p>\n\n\n\n

116. <\/strong>Tasdelen, B., Sadeghi-Tarakameh, A., Yilmaz, U. and Atalar, E., Analysis and Mitigation of Noise in Simultaneous Transmission and Reception in MRI<\/em><\/strong> in Magn Reson Med<\/em> 2021<\/strong>, 8: 1746-1758.<\/p>\n\n\n\n

115. <\/strong>Acikel, V., Silemek, B. and Atalar, E., Wireless control of induced radiofrequency currents in active implantable medical devices during MRI<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2020<\/strong>, 83: 2370-2381.<\/p>\n\n\n\n

114. <\/strong>Golestanirad, L., Kazemivalipour, E., Lampman, D., Habara, H., Atalar, E., Rosenow, J., Pilitsis, J. and Kirsch, J., RF heating of deep brain stimulation implants in open-bore vertical MRI systems: A simulation study with realistic device configurations<\/em><\/strong> in Magnetic Resonance in Medicin<\/em> 2020<\/strong>, 83: 2284-2292.<\/p>\n\n\n\n

113. <\/strong>Oezen, A.C., Silemek, B., Lottner, T., Atalar, E. and Bock, M., MR safety watchdog for active catheters: Wireless impedance control with real-time feedback<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2020<\/strong>, 84: 1048-1060.<\/p>\n\n\n\n

112. <\/strong>Sadeghi-Tarakameh, A., DelaBarre, L., Torrado-Carvajal, R.L.L.a., Du, X., Grant, A., Adriany, G., Metzger, G.J., Moortele, a.P.F.V.d., Ugurbil, K., Atalar, E. and Eryaman, Y., In vivo human head MRI at 10.5T: A radiofrequency safety study and preliminary imaging results<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2020<\/strong>, 84: 484-496.<\/p>\n\n\n\n

111. <\/strong>Sadeghi-Tarakameh, A., Adriany, G., Metzger, G.J., Lagore, R.L., Jungst, S., DelaBarre, L., Moortele, P.F.V.d., Ugurbil, K., Atalar, E. and Eryaman, Y., Improving radiofrequency power and specific absorption rate management with bumped transmit elements in ultra-high field MRI<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2020<\/strong>, 84: 3485-3493.<\/p>\n\n\n\n

110. <\/strong>Ertan, K., Taraghinia, S. and Atalar, E., Driving mutually coupled gradient array coils in magnetic resonance imaging <\/em><\/strong>in Magnetic Resonance in Medicine<\/em> 2019<\/strong>, 82: 1187-1198.<\/p>\n\n\n\n

109. <\/strong>Kazemivalipour, E., Keil, B., Vali, A., Rajan, S., Elahi, B., Atalar, E., Wald, L.L., Rosenow, J., Pilitsis, J. and Golestanirad, L., Reconfigurable MRI technology for low-SAR imaging of deep brain stimulation at 3T:<\/em><\/strong> Application in bilateral leads, fully-implanted systems, and surgically modified lead trajectories<\/em><\/strong> in Neuroimage <\/em>2019<\/strong>, 199: 18-29.<\/p>\n\n\n\n

108. <\/strong>Alipour, A., Gokyar, S., Algin, O., Atalar, E. and Demir, H.V., An inductively coupled ultra-thin, flexible and passive RF resonator for MRI marking and guiding purposes: clinical feasibility<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2018<\/strong>, 80: 361-370.<\/p>\n\n\n\n

107. <\/strong>Ertan, K., Taraghinia, S., Sadeghi-Tarakameh, A. and Atalar., E., A Z-Gradient Array for Simultaneous Multi-Slice Excitation with a Single Band RF pulse<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2018<\/strong>, 80: 400-412.<\/p>\n\n\n\n

106. <\/strong>Gokyar, S., Alipour, A., Unal, E., Atalar, E. and Demir, H.V., Wireless deep-subwavelength metamaterial enabling sub-mm resolution magnetic resonance imaging<\/em><\/strong> in Sensors and Actuators A<\/em> 2018<\/strong>, 274: 211-219.<\/p>\n\n\n\n

105. <\/strong>Ozen, A.C., Atalar, E., Korvink, J.G. and Bock, M., In vivo MRI with Concurrent Excitation and Acquisition using Automated Active Analog Cancellation<\/em><\/strong> in Scientific Reports<\/em> 2018<\/strong>, 8: 10631.<\/p>\n\n\n\n

104. <\/strong>Silemek, B., Acikel, V., Oto, C., Alipour, A., Aykut, Z.G., Algin, O. and Atalar, E., A Temperature Sensor Implant for Active Implantable Medical Devices for In Vivo Subacute Heating Tests Under MRI<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2018<\/strong>, 79: 2824-2832.<\/p>\n\n\n\n

103. <\/strong>Ertan, K. and Atalar, E., Simultaneous use of linear and nonlinear gradients for B1+ inhomogeneity correction<\/em><\/strong> in NMR in Biomedicine<\/em> 2017<\/strong>, 30: e3742.<\/p>\n\n\n\n

102. <\/strong>Gokyar, S., Alipour, A., Unal, E., Atalar, E. and Demir, H.V., Magnetic Resonance Imaging Assisted by Wireless Passive Implantable Fiducial e-Markers<\/em><\/strong> in IEEE Access<\/em> 2017<\/strong>, 5: 19693-19702.<\/p>\n\n\n\n

101. <\/strong>Acikel, V., Uslubas, A. and Atalar, E., Modeling of electrodes and implantable pulse generator cases for the analysis of implant tip heating under MR imaging.<\/em><\/strong> in Med Phys<\/em> 2015<\/strong>, 42: 3922.<\/p>\n\n\n\n

100. <\/strong>Ozen, A.C., Bock, M. and Atalar, E., Active Decoupling of RF Coils Using a Transmit Array System<\/em><\/strong> in Magnetic Resonance Materials in Physics, Biology and Medicine<\/em> 2015<\/strong>, 28: 565-576.<\/p>\n\n\n\n

99. <\/strong>Turk, E.A., Ider, Y.Z., Ergun, A.S. and Atalar, E., Approximate Fourier domain expression for Bloch-Siegert shift<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2015<\/strong>, 73: 117-125.<\/p>\n\n\n\n

98. <\/strong>Tekdas, D.A., Ruslan Garifullin, , Berna Senturk, , Zorlu, Y., Gundogdu, U., Atalar, E., Tekinay, A.B., Chernonosov, A.A., Yerli, Y., Dumoulin, F., Guler, M.O., Ahsen, V. and Gurek, A.G., Design of a Gd-DOTA-phthalocyanine conjugate combining MRI contrast imaging and photosensitization properties as a potential molecular theranostic.<\/em><\/strong> in Photochem Photobiol<\/em> 2014<\/strong>, 90: 1376-1386.<\/p>\n\n\n\n

97. <\/strong>Celik, H., Mahcicek, D.I., Senel, O.K., Wright, G.A. and Atalar, E., Tracking the position and rotational orientation of a catheter using a transmit array system.<\/em><\/strong> in IEEE Trans Med Imaging<\/em> 2013<\/strong>, 32: 809-817.<\/p>\n\n\n\n

96. <\/strong>Eryaman, Y., Turk, E.A., Oto, C., Algin, O. and Atalar, E., Reduction of the radiofrequency heating of metallic devices using a dual-drive birdcage coil.<\/em><\/strong> in Magn Reson Med<\/em> 2013<\/strong>, 69: 845-857.<\/p>\n\n\n\n

95. <\/strong>Kopanoglu, E., Yilmaz, U., Gokhalk, Y. and Atalar, E., Specific absorption rate reduction using nonlinear gradient fields<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2013<\/strong>, 70: 537-546.<\/p>\n\n\n\n

94. <\/strong>Celik, H. and Atalar, E., Reverse polarized inductive coupling to transmit and receive radiofrequency coil arrays.<\/em><\/strong> in Magn Reson Med<\/em> 2012<\/strong>, 67: 446-456.<\/p>\n\n\n\n

93. <\/strong>Turk, E.A., Kopanoglu, E., Guney, S., Bugdayci, K.E., Ider, Y.Z., Erturk, V.B. and Atalar, E., A simple analytical expression for the gradient induced potential on active implants during MRI.<\/em><\/strong> in IEEE Trans Biomed Eng<\/em> 2012<\/strong>, 59: 2845-2851.<\/p>\n\n\n\n

92. <\/strong>Acikel, V. and Atalar, E., Modeling of radio-frequency induced currents on lead wires during MR imaging using a modified transmission line method<\/em><\/strong> in Medical Physics<\/em> 2011<\/strong>, 38: 6623-6632.<\/p>\n\n\n\n

91. <\/strong>Barak, T., Kwan, K.Y., Louvi, A., Demirbilek, V., Saygi, S., Tuysuz, B., Choi, M., Boyaci, H., Doerschner, K., Zhu, Y.,Kaymakcalan, H., Yilmaz, S., Bakircioglu, M., Caglayan, A.O., Ozturk, A.K., Yasuno, K., Brunken, W.J., Atalar, E., Yalcinkaya, C., Dincer, A., Bronen, R.A., Mane, S., Ozcelik, T., Lifton, R.P., Sestan, N., Bilguvar, K. and Gunel, M., Recessive LAMC3 mutations cause malformations of occipital cortical development<\/em><\/strong> in Nature Genetics<\/em> 2011<\/strong>, 43: 590-594.<\/p>\n\n\n\n

90. <\/strong>Eryaman, Y., Akin, B. and Atalar, E., Reduction of implant RF heating through modification of transmit coil electric field.<\/em><\/strong> in Magn Reson Med<\/em> 2011<\/strong>, 65: 1305-1313.<\/p>\n\n\n\n

89. <\/strong>Eryaman, Y., Hersek, S. and Atalar, E., Comments on Ensuring safety of implanted devices under MRI using reversed polarization.<\/em><\/strong> in Magn Reson Med<\/em> 2011<\/strong>, 66: 1515-1516.<\/p>\n\n\n\n

88. <\/strong>Gulsuner, S., Tekinay, A.B., Doerschner, K., Boyaci, H., Bilguvar, K., Unal, H., Ors, A., Onat, O.E., Atalar, E., Basak, A.N., Topaloglu, H., Kansu, T., Tan, M., Tan, U., Gunel, M. and Ozcelik, T., Homozygosity mapping and targeted genomic sequencing reveal the gene responsible for cerebellar hypoplasia and quadrupedal locomotion in a consanguineous kindred.<\/em><\/strong> in Genome Res<\/em> 2011<\/strong>, 21: 1995-2003.<\/p>\n\n\n\n

87. <\/strong>Kopanoglu, E., Erturk, V.B. and Atalar, E., Analytic expressions for the ultimate intrinsic signal-to-noise ratio and ultimate intrinsic specific absorption rate in MRI.<\/em><\/strong> in Magn Reson Med<\/em> 2011<\/strong>, 66: 846-858.<\/p>\n\n\n\n

86. <\/strong>Sulek, S., Mammadov, B., Mahcicek, D.I., Sozeri, H., Atalar, E., Tekinay, A.B. and Guler, M.O., Peptide Functionalized Superparamagnetic Iron Oxide Nanoparticles as MRI Contrast Agents<\/em><\/strong> in Journal of Materials Chemistry<\/em> 2011<\/strong>, 21: 15157-15161.<\/p>\n\n\n\n

85. <\/strong>Ahsen, O.O., Yilmaz, U., Aksoy, M.D., Ertas, G. and Atalar., E., Heating of magnetic fluid systems driven by circularly polarized magnetic field<\/em><\/strong> in Journal of Magnetism and Magnetic Materials<\/em> 2010<\/strong>, 322: 3053-3059.<\/p>\n\n\n\n

84. <\/strong>Qian, D., El-Sharkawy, A.M.M., Atalar, E. and Bottomley, P.A., Interventional MRI: tapering improves the distal sensitivity of the loopless antenna.<\/em><\/strong> in Magn Reson Med<\/em> 2010<\/strong>, 63: 797-802.<\/p>\n\n\n\n

83. <\/strong>Eryaman, Y., Oner, Y. and Atalar, E., Design of internal MRI coils using ultimate intrinsic SNR.<\/em><\/strong> in MAGMA<\/em> 2009<\/strong>, 22: 221-228.<\/p>\n\n\n\n

82. <\/strong>Tasci, T.O., Vargel, I., Arat, A., Guzel, E., Korkusuz, P. and Atalar, E., Focused RF hyperthermia using magnetic fluids. <\/em><\/strong>in Med Phys<\/em> 2009<\/strong>, 36: 1906-1912.<\/p>\n\n\n\n

81. <\/strong>Brushett, C., Qiu, B., Atalar, E. and Yang, X., High-resolution MRI of deep-seated atherosclerotic arteries using motexafin gadolinium<\/em><\/strong> in Journal of Magnetic Resonance Imaging<\/em> 2008<\/strong>, 27: 246-250.<\/p>\n\n\n\n

80. <\/strong>Memis, O.G., Eryaman, Y., Aytur, O. and Atalar, E., Miniaturized fiber-optic transmission system for MRI signals.<\/em><\/strong> in Magn Reson Med<\/em> 2008<\/strong>, 59: 165-173.<\/p>\n\n\n\n

79. <\/strong>Qiu, B., Gao, F., Karmarkar, P., Atalar, E. and Yang, X., Intracoronary MR imaging using a 0.014-inch MR imaging-guidewire: toward MRI-guided coronary interventions.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2008<\/strong>, 28: 515-518.<\/p>\n\n\n\n

78. <\/strong>Tasci, T.O., Atalar, E., Demirok, U.K. and Suzer, S., Electrical circuit modeling of surface structures for X-ray photoelectron spectroscopic measurements<\/em><\/strong> in Surface Science<\/em> 2008<\/strong>, 602: 365-368.<\/p>\n\n\n\n

77. <\/strong>Akca, I.B., Ferhanoglu, O., Yeung, C.J., Guney, S., Tasci, T.O. and Atalar, E., Measuring local RF heating in MRI: Simulating perfusion in a perfusionless phantom.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2007<\/strong>, 26: 1228-1235.<\/p>\n\n\n\n

76. <\/strong>Celik, H., Uluturk, A., Tali, T. and Atalar, E., A catheter tracking method using reverse polarization for MR-guided interventions.<\/em><\/strong> in Magn Reson Med<\/em> 2007<\/strong>, 58: 1224-1231.<\/p>\n\n\n\n

75. <\/strong>Sathyanarayana, S., Aksit, P., Arepally, A., Karmarkar, P.V., Solaiyappan, M. and Atalar, E., Tracking planar orientations of active MRI needles.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2007<\/strong>, 26: 386-391.<\/p>\n\n\n\n

74. <\/strong>Arepally, A., Karmarkar, P.V., Qian, D., Barnett, B. and Atalar, E., Evaluation of MR\/fluoroscopy-guided portosystemic shunt creation in a swine model.<\/em><\/strong> in J Vasc Interv Radiol<\/em> 2006<\/strong>, 17: 1165-1173.<\/p>\n\n\n\n

73. <\/strong>Arepally, A., Karmarkar, P.V., Weiss, C. and Atalar, E., Percutaneous MR imaging-guided transvascular access of mesenteric venous system: study in swine model.<\/em><\/strong> in Radiology<\/em> 2006<\/strong>, 238: 113-118.<\/p>\n\n\n\n

72. <\/strong>Chowning, S.L., Susil, R.C., Krieger, A., Fichtinger, G., Whitcomb, L.L. and Atalar, E., A preliminary analysis and model of prostate injection distributions.<\/em><\/strong> in Prostate<\/em> 2006<\/strong>, 66: 344-357.<\/p>\n\n\n\n

71. <\/strong>El-Sharkawy, A.M.M., Sotiriadis, P.P., Bottomley, P.A. and Atalar, E., Absolute Temperature Monitoring Using RF Radiometry in the MRI Scanner.<\/em><\/strong> in IEEE Trans Circuits Syst I Regul Pap<\/em> 2006<\/strong>, 53: 2396-2404.<\/p>\n\n\n\n

70. <\/strong>El-Sharkawy, A.M., Schar, M., Bottomley, P.A. and Atalar, E., Monitoring and correcting spatio-temporal variations of the MR scanner’s static magnetic field.<\/em><\/strong> in MAGMA<\/em> 2006<\/strong>, 19: 223-236.<\/p>\n\n\n\n

69. <\/strong>Raval, A.N., Karmarkar, P.V., Guttman, M.A., Ozturk, C., Desilva, R., Aviles, R.J., Wright, V.J., Schenke, W.H., Atalar, E., McVeigh, E.R. and Lederman, R.J., Real-time MRI guided atrial septal puncture and balloon septostomy in swine.<\/em><\/strong> in Catheter Cardiovasc Interv<\/em> 2006<\/strong>, 67: 637-643.<\/p>\n\n\n\n

68. <\/strong>Raval, A.N., Karmarkar, P.V., Guttman, M.A., Ozturk, C., Sampath, S., DeSilva, R., Aviles, R.J., Xu, M., Wright, V.J., Schenke, W.H., Kocaturk, O., Dick, A.J., Raman, V.K., Atalar, E., McVeigh, E.R. and Lederman, R.J., Real-time magnetic resonance imaging-guided endovascular recanalization of chronic total arterial occlusion in a swine model.<\/em><\/strong> in Circulation<\/em> 2006<\/strong>, 113: 1101-1107.<\/p>\n\n\n\n

67. <\/strong>Susil, R.C., Menard, C., Krieger, A., Coleman, J.A., Camphausen, K., Choyke, P., Fichtinger, G., Whitcomb, L.L., Coleman, C.N. and Atalar, E., Transrectal prostate biopsy and fiducial marker placement in a standard 1.5T magnetic resonance imaging scanner.<\/em><\/strong> in J Urol<\/em> 2006<\/strong>, 175: 113-120.<\/p>\n\n\n\n

66. <\/strong>Yang, X. and Atalar, E., MRI-guided gene therapy.<\/em><\/strong> in FEBS Lett<\/em> 2006<\/strong>, 580: 2958-2961.<\/p>\n\n\n\n

65. <\/strong>Arepally, A., Karmarkar, P.V., Weiss, C., Rodriguez, E.R., Lederman, R.J. and Atalar, E., Magnetic resonance image-guided trans-septal puncture in a swine heart.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2005<\/strong>, 21: 463-467.<\/p>\n\n\n\n

64. <\/strong>Atalar, E., Radiofrequency safety for interventional MRI procedures.<\/em><\/strong> in Acad Radiol<\/em> 2005<\/strong>, 12: 1149-1157.<\/p>\n\n\n\n

63. <\/strong>Atalar, E. and Menard, C., MR-guided interventions for prostate cancer.<\/em><\/strong> in Magn Reson Imaging Clin N Am<\/em> 2005<\/strong>, 13: 491-504.<\/p>\n\n\n\n

62. <\/strong>Krieger, A., Susil, R.C., Menard, C., Coleman, J.A., Fichtinger, G., Atalar, E. and Whitcomb, L.L., Design of a novel MRI compatible manipulator for image guided prostate interventions.<\/em><\/strong> in IEEE Trans Biomed Eng<\/em> 2005<\/strong>, 52: 306-313.<\/p>\n\n\n\n

61. <\/strong>Mernard, C., Susil, R.C., Choyke, P., Coleman, J., Grubb, R., Gharib, A., Krieger, A., Guion, P., Thomasson, D., Ullman,<\/p>\n\n\n\n

K., Gupta, S., Espina, V., Liotta, L., Petricoin, E., Fitchtinger, G., Whitcomb, L.L., Atalar, E., Coleman, C.N. and Camphausen, K., An interventional magnetic resonance imaging technique for the molecular characterization of intraprostatic dynamic contrast enhancement.<\/em><\/strong> in Mol Imaging<\/em> 2005<\/strong>, 4: 63-66.<\/p>\n\n\n\n

60. <\/strong>Qiu, B., El-Sharkawy, A.M., Paliwal, V., Karmarkar, P., Gao, F., Atalar, E. and Yang, X., Simultaneous radiofrequency (RF) heating and magnetic resonance (MR) thermal mapping using an intravascular MR imaging\/RF heating system.<\/em><\/strong> in Magn Reson Med<\/em> 2005<\/strong>, 54: 226-230.<\/p>\n\n\n\n

59. <\/strong>Qiu, B., Karmarkar, P., Brushett, C., Gao, F., Kon, R., Kar, S., Atalar, E. and Yang, X., Development of a 0.014-inch magnetic resonance imaging guidewire.<\/em><\/strong> in Magn Reson Med<\/em> 2005<\/strong>, 53: 986-990.<\/p>\n\n\n\n

58. <\/strong>Raman, V.K., Karmarkar, P.V., Guttman, M.A., Dick, A.J., Peters, D.C., Ozturk, C., Pessanha, B.S.S., Thompson, R.B., Raval, A.N., DeSilva, R., Aviles, R.J., Atalar, E., McVeigh, E.R. and Lederman, R.J., Real-time magnetic resonance-guided endovascular repair of experimental abdominal aortic aneurysm in swine.<\/em><\/strong> in J Am Coll Cardiol <\/em>2005<\/strong>, 45: 2069-2077.<\/p>\n\n\n\n

57. <\/strong>Celik, H., Eryaman, Y., Altintas, A., Abdel-Hafez, I.A. and Atalar, E., Evaluation of internal MRI coils using ultimate intrinsic SNR.<\/em><\/strong> in Magn Reson Med<\/em> 2004<\/strong>, 52: 640-649.<\/p>\n\n\n\n

56. <\/strong>Karmarkar, P., Kraitchman, D., Izbudak, I., Hofmann, L., Amado, L., Fritzges, D., Young, R., Pittenger, M., Bulte, J. and Atalar, E., MR-trackable intramyocardial injection catheter<\/em><\/strong> in Magnetic Resonance in Medicine<\/em> 2004<\/strong>, 51: 1163-1172.<\/p>\n\n\n\n

55. <\/strong>Paliwal, V., El-Sharkawy, A.M., Du, X., Yang, X. and Atalar, E., SSFP-based MR thermometry.<\/em><\/strong> in Magn Reson Med<\/em> 2004<\/strong>, 52: 704-708.<\/p>\n\n\n\n

54. <\/strong>Susil, R.C., Camphausen, K., Choyke, P., McVeigh, E.R., Gustafson, G.S., Ning, H., Miller, R.W., Atalar, E., Coleman, C.N. and Menard, C., System for prostate brachytherapy and biopsy in a standard 1.5 T MRI scanner.<\/em><\/strong> in Magn Reson Med<\/em> 2004<\/strong>, 52: 683-687.<\/p>\n\n\n\n

53. <\/strong>Tsekos, N.V., Atalar, E., Li, D., Omary, R.A., Serfaty, J.M. and Woodard, P.K., Magnetic resonance imaging-guided coronary interventions.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2004<\/strong>, 19: 734-749.<\/p>\n\n\n\n

52. <\/strong>Kraitchman, D.L., Heldman, A.W., Atalar, E., Amado, L.C., Martin, B.J., Pittenger, M.F., Hare, J.M. and Bulte, J.W.M., In vivo magnetic resonance imaging of mesenchymal stem cells in myocardial infarction.<\/em><\/strong> in Circulation<\/em> 2003<\/strong>, 107: 2290-2293.<\/p>\n\n\n\n

51. <\/strong>Sampath, S., Derbyshire, J.A., Atalar, E., Osman, N.F. and Prince, J.L., Real-time imaging of two-dimensional cardiac strain using a harmonic phase magnetic resonance imaging (HARP-MRI) pulse sequence.<\/em><\/strong> in Magn Reson Med <\/em>2003<\/strong>, 50: 154-163.<\/p>\n\n\n\n

50. <\/strong>Serfaty, J.M., Yang, X., Foo, T.K., Kumar, A., Derbyshire, A. and Atalar, E., MRI-guided coronary catheterization and PTCA: A feasibility study on a dog model.<\/em><\/strong> in Magn Reson Med<\/em> 2003<\/strong>, 49: 258-263.<\/p>\n\n\n\n

49. <\/strong>Susil, R.C., Krieger, A., Derbyshire, J.A., Tanacs, A., Whitcomb, L.L., Fichtinger, G. and Atalar, E., System for MR image-guided prostate interventions: canine study.<\/em><\/strong> in Radiology<\/em> 2003<\/strong>, 228: 886-894.<\/p>\n\n\n\n

48. <\/strong>Susil, R.C., Yeung, C.J. and Atalar, E., Intravascular extended sensitivity (IVES) MRI antennas.<\/em><\/strong> in Magn Reson Med <\/em>2003<\/strong>, 50: 383-390.<\/p>\n\n\n\n

47. <\/strong>Yung, A.C., Oner, A.Y., Serfaty, J.M., Feneley, M., Yang, X. and Atalar, E., Phased-array MRI of canine prostate using endorectal and endourethral coils.<\/em><\/strong> in Magn Reson Med<\/em> 2003<\/strong>, 49: 710-715.<\/p>\n\n\n\n

46. <\/strong>Aksit, P., Derbyshire, J.A., Serfaty, J.M. and Atalar, E., Multiple field of view MR fluoroscopy.<\/em><\/strong> in Magn Reson Med<\/em> 2002<\/strong>, 47: 53-60.<\/p>\n\n\n\n

45. <\/strong>Qiu, B., Yeung, C.J., Du, X., Atalar, E. and Yang, X., Development of an intravascular heating source using an MR imaging guidewire.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2002<\/strong>, 16: 716-720.<\/p>\n\n\n\n

44. <\/strong>Susil, R.C., Yeung, C.J., Halperin, H.R., Lardo, A.C. and Atalar, E., Multifunctional interventional devices for MRI: a combined electrophysiology\/MRI catheter.<\/em><\/strong> in Magn Reson Med<\/em> 2002<\/strong>, 47: 594-600.<\/p>\n\n\n\n

43. <\/strong>Yang, X., Yeung, C.J., Ji, H., Serfaty, J.M. and Atalar, E., Thermal effect of intravascular MR imaging using an MR imaging-guidewire: an in vivo laboratory and histopathological evaluation.<\/em><\/strong> in Med Sci Monit<\/em> 2002<\/strong>, 8: MT113–MT117.<\/p>\n\n\n\n

42. <\/strong>Yeung, C.J., Susil, R.C. and Atalar, E., RF heating due to conductive wires during MRI depends on the phase distribution of the transmit field.<\/em><\/strong> in Magn Reson Med<\/em> 2002<\/strong>, 48: 1096-1098.<\/p>\n\n\n\n

41. <\/strong>Yeung, C.J., Susil, R.C. and Atalar, E., RF safety of wires in interventional MRI: using a safety index.<\/em><\/strong> in Magn Reson Med<\/em> 2002<\/strong>, 47: 187-193.<\/p>\n\n\n\n

40. <\/strong>Fichtinger, G., Krieger, A., Susil, R., Tanacs, A., Whitcomb, L. and Atalarn, E., Transrectal Prostate Biopsy Inside Closed MRI Scanner with Remote Actuation, under Real-Time Image Guidance<\/em><\/strong> in 2002<\/strong>, 2488: 91-98.<\/p>\n\n\n\n

39. <\/strong>Bolster, B.D., Serfaty, J.M. and Atalar, E., In vivo measurement of pulsewave velocity in small vessels using intravascular MR.<\/em><\/strong> in Magn Reson Med<\/em> 2001<\/strong>, 45: 53-60.<\/p>\n\n\n\n

38. <\/strong>Osman, N.F., Sampath, S., Atalar, E. and Prince, J.L., Imaging longitudinal cardiac strain on short-axis images using strain-encoded MRI.<\/em><\/strong> in Magn Reson Med<\/em> 2001<\/strong>, 46: 324-334.<\/p>\n\n\n\n

37. <\/strong>Quick, H.H., Serfaty, J.M., Pannu, H.K., Genadry, R., Yeung, C.J. and Atalar, E., Endourethral MRI.<\/em><\/strong> in Magn Reson Med <\/em>2001<\/strong>, 45: 138-146.<\/p>\n\n\n\n

36. <\/strong>Shunk, K.A., Atalar, E. and Lima, J.A., Possibilities of transesophageal MRI for assessment of aortic disease: a review. <\/em><\/strong>in Int J Cardiovasc Imaging<\/em> 2001<\/strong>, 17: 179-185.<\/p>\n\n\n\n

35. <\/strong>Shunk, K.A., Garot, J., Atalar, E. and Lima, J.A., Transesophageal magnetic resonance imaging of the aortic arch and descending thoracic aorta in patients with aortic atherosclerosis.<\/em><\/strong> in J Am Coll Cardiol<\/em> 2001<\/strong>, 37: 2031-2035.<\/p>\n\n\n\n

34. <\/strong>Yang, X., Atalar, E., Li, D., Serfaty, J.M., Wang, D., Kumar, A. and Cheng, L., Magnetic resonance imaging permits in vivo monitoring of catheter-based vascular gene delivery.<\/em><\/strong> in Circulation<\/em> 2001<\/strong>, 104: 1588-1590.<\/p>\n\n\n\n

33. <\/strong>Yeung, C.J. and Atalar, E., A Green’s function approach to local rf heating in interventional MRI.<\/em><\/strong> in Med Phys<\/em> 2001<\/strong>, 28: 826-832.<\/p>\n\n\n\n

32. <\/strong>Bottomley, P.A., Atalar, E., Lee, R.F., Shunk, K.A. and Lardo, A., Cardiovascular MRI probes for the outside in and for the inside out.<\/em><\/strong> in MAGMA<\/em> 2000<\/strong>, 11: 49-51.<\/p>\n\n\n\n

31. <\/strong>Serfaty, J.M., Yang, X., Aksit, P., Quick, H.H., Solaiyappan, M. and Atalar, E., Toward MRI-guided coronary catheterization: visualization of guiding catheters, guidewires, and anatomy in real time.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2000<\/strong>, 12: 590-594.<\/p>\n\n\n\n

30. <\/strong>Serfaty, J.M., Atalar, E., Declerck, J., Karmakar, P., Quick, H.H., Shunk, K.A., Heldman, A.W. and Yang, X., Real-time projection MR angiography: feasibility study.<\/em><\/strong> in Radiology<\/em> 2000<\/strong>, 217: 290-295.<\/p>\n\n\n\n

29. <\/strong>Yang, X. and Atalar, E., Intravascular MR imaging-guided balloon angioplasty with an MR imaging guide wire: feasibility study in rabbits.<\/em><\/strong> in Radiology<\/em> 2000<\/strong>, 217: 501-506.<\/p>\n\n\n\n

28. <\/strong>Yeung, C.J. and Atalar, E., RF transmit power limit for the barewire loopless catheter antenna.<\/em><\/strong> in J Magn Reson Imaging<\/em> 2000<\/strong>, 12: 86-91.<\/p>\n\n\n\n

27. <\/strong>Artemov, D., Revelon, G., Atalar, E., Bluemke, D.A., Bhujwalla, Z.M. and Zerhouni, E.A., Switchable multicoil array for MR micro-imaging of breast lesions.<\/em><\/strong> in Magn Reson Med<\/em> 1999<\/strong>, 41: 569-574.<\/p>\n\n\n\n

26. <\/strong>Bolster, B.D. and Atalar, E., Minimizing dead-periods in flow-encoded or -compensated pulse sequences while imaging in oblique planes.<\/em><\/strong> in J Magn Reson Imaging<\/em> 1999<\/strong>, 10: 183-192.<\/p>\n\n\n\n

25. <\/strong>Reeder, S.B., Faranesh, A.Z., Atalar, E. and McVeigh, E.R., A novel object-independent balanced reference scan for echo-planar imaging.<\/em><\/strong> in J Magn Reson Imaging<\/em> 1999<\/strong>, 9: 847-852.<\/p>\n\n\n\n

24. <\/strong>Reeder, S.B., Atalar, E., Faranesh, A.Z. and McVeigh, E.R., Multi-echo segmented k-space imaging: an optimized hybrid sequence for ultrafast cardiac imaging.<\/em><\/strong> in Magn Reson Med<\/em> 1999<\/strong>, 41: 375-385.<\/p>\n\n\n\n

23. <\/strong>Reeder, S.B., Atalar, E., Faranesh, A.Z. and McVeigh, E.R., Referenceless interleaved echo-planar imaging.<\/em><\/strong> in Magn Reson Med<\/em> 1999<\/strong>, 41: 87-94.<\/p>\n\n\n\n

22. <\/strong>Shunk, K.A., Lima, J.A., Heldman, A.W. and Atalar, E., Transesophageal magnetic resonance imaging.<\/em><\/strong> in Magn Reson Med<\/em> 1999<\/strong>, 41: 722-726.<\/p>\n\n\n\n

21. <\/strong>Yang, X., Atalar, E. and Zerhouni, E.A., Intravascular MR imaging and intravascular MR-guided interventions.<\/em><\/strong> in Int J Cardiovasc Intervent<\/em> 1999<\/strong>, 2: 85-96.<\/p>\n\n\n\n

20. <\/strong>Atalar, E., Kraitchman, D.L., Carkhuff, B., Lesho, J., Ocali, O., Solaiyappan, M., Guttman, M.A. and Charles, H.K., Catheter-tracking FOV MR fluoroscopy.<\/em><\/strong> in Magn Reson Med<\/em> 1998<\/strong>, 40: 865-872.<\/p>\n\n\n\n

19. <\/strong>Bolster, B.D., Atalar, E., Hardy, C.J. and McVeigh, E.R., Accuracy of arterial pulse-wave velocity measurement using MR.<\/em><\/strong> in J Magn Reson Imaging<\/em> 1998<\/strong>, 8: 878-888.<\/p>\n\n\n\n

18. <\/strong>Boxerman, J.L., Mosher, T.J., McVeigh, E.R., Atalar, E., Lima, J.A. and Bluemke, D.A., Advanced MR imaging techniques for evaluation of the heart and great vessels.<\/em><\/strong> in Radiographics<\/em> 1998<\/strong>, 18: 543-564.<\/p>\n\n\n\n

17. <\/strong>Croisille, P., Guttman, M.A., Atalar, E., McVeigh, E.R. and Zerhouni, E.A., Precision of myocardial contour estimation from tagged MR images with a black-blood technique.<\/em><\/strong> in Acad Radiol<\/em> 1998<\/strong>, 5: 93-100.<\/p>\n\n\n\n

16. <\/strong>Ocali, O. and Atalar, E., Ultimate intrinsic signal-to-noise ratio in MRI.<\/em><\/strong> in Magn Reson Med<\/em> 1998<\/strong>, 39: 462-473.<\/p>\n\n\n\n

15. <\/strong>Yang, X., Bolster, B.D., Kraitchman, D.L. and Atalar, E., Intravascular MR-monitored balloon angioplasty: an in vivo feasibility study.<\/em><\/strong> in J Vasc Interv Radiol<\/em> 1998<\/strong>, 9: 953-959.<\/p>\n\n\n\n

14. <\/strong>Bluemke, D.A., Boxerman, J.L., Atalar, E. and McVeigh, E.R., Segmented K-space cine breath-hold cardiovascular MR imaging: Part 1. Principles and technique.<\/em><\/strong> in AJR Am J Roentgenol<\/em> 1997<\/strong>, 169: 395-400.<\/p>\n\n\n\n

13. <\/strong>Constantinides, C.D., Atalar, E. and McVeigh, E.R., Signal-to-noise measurements in magnitude images from NMR phased arrays.<\/em><\/strong> in Magn Reson Med<\/em> 1997<\/strong>, 38: 852-857.<\/p>\n\n\n\n

12. <\/strong>Correia, L.C., Atalar, E., Kelemen, M.D., Ocali, O., Hutchins, G.M., Fleg, J.L., Gerstenblith, G., Zerhouni, E.A. and Lima, J.A., Intravascular magnetic resonance imaging of aortic atherosclerotic plaque composition.<\/em><\/strong> in Arterioscler Thromb Vasc Biol<\/em> 1997<\/strong>, 17: 3626-3632.<\/p>\n\n\n\n

11. <\/strong>Ocali, O. and Atalar, E., Intravascular magnetic resonance imaging using a loopless catheter antenna.<\/em><\/strong> in Magn Reson Med<\/em> 1997<\/strong>, 37: 112-118.<\/p>\n\n\n\n

10. <\/strong>Reeder, S.B., Atalar, E., Bolster, B.D. and McVeigh, E.R., Quantification and reduction of ghosting artifacts in interleaved echo-planar imaging.<\/em><\/strong> in Magn Reson Med<\/em> 1997<\/strong>, 38: 429-439.<\/p>\n\n\n\n

9. <\/strong>Atalar, E., Bottomley, P.A., Ocali, O., Correia, L.C., Kelemen, M.D., Lima, J.A. and Zerhouni, E.A., High resolution intravascular MRI and MRS by using a catheter receiver coil.<\/em><\/strong> in Magn Reson Med<\/em> 1996<\/strong>, 36: 596-605.<\/p>\n\n\n\n

8. <\/strong>Bottomley, P.A., Atalar, E. and Weiss, R.G., Human cardiac high-energy phosphate metabolite concentrations by 1D-resolved NMR spectroscopy.<\/em><\/strong> in Magn Reson Med<\/em> 1996<\/strong>, 35: 664-670.<\/p>\n\n\n\n

7. <\/strong>Judd, R.M., Reeder, S.B., Atalar, E., McVeigh, E.R. and Zerhouni, E.A., A magnetization-driven gradient echo pulse sequence for the study of myocardial perfusion.<\/em><\/strong> in Magn Reson Med<\/em> 1995<\/strong>, 34: 276-282.<\/p>\n\n\n\n

6. <\/strong>Lima, J.A., Judd, R.M., Bazille, A., Schulman, S.P., Atalar, E. and Zerhouni, E.A., Regional heterogeneity of human myocardial infarcts demonstrated by contrast-enhanced MRI. Potential mechanisms.<\/em><\/strong> in Circulation<\/em> 1995<\/strong>, 92: 1117-1125.<\/p>\n\n\n\n

5. <\/strong>Atalar, E. and McVeigh, E.R., Minimization of dead-periods in MRI pulse sequences for imaging oblique planes.<\/em><\/strong> in Magn Reson Med<\/em> 1994<\/strong>, 32: 773-777.<\/p>\n\n\n\n

4. <\/strong>Atalar, E. and McVeigh, E.R., Optimization of tag thickness for measuring position with magnetic resonance imaging. <\/em><\/strong>in IEEE Trans Med Imaging<\/em> 1994<\/strong>, 13: 152-160.<\/p>\n\n\n\n

3. <\/strong>McVeigh, E.R. and Atalar, E., Cardiac tagging with breath-hold cine MRI.<\/em><\/strong> in Magn Reson Med<\/em> 1992<\/strong>, 28: 318-327.<\/p>\n\n\n\n

2. <\/strong>Atalar, E. and Onural, L., A respiratory motion artifact reduction method in magnetic resonance imaging of the chest. <\/em><\/strong>in IEEE Trans Med Imaging<\/em> 1991<\/strong>, 10: 11-24.<\/p>\n\n\n\n

1. <\/strong>Ider, Y.Z., Gencer, N.G., Atalar, E. and Tosun, H., Electrical impedance tomography of translationally uniform cylindrical objects with general cross-sectional boundaries.<\/em><\/strong> in IEEE Trans Med Imaging<\/em> 1990<\/strong>, 9: 49-59.<\/p>\n","protected":false},"excerpt":{"rendered":"

130. Ozkara, D., Yazici, I., Mahmoudalilou, E. M., Brunheim, S., DelaBarre, L, Stoecker, T., Eryaman, Y., and Atalar, E., EM Simulation Model of a Clinically-Used RF Head Coil at 7 T, in Magnetic Resonance in Medicine, 2026, Early view. doi: https:\/\/doi.org\/10.1002\/mrm.70244. 129. Takrimi, M. and Atalar, E., Eddy Current Compensation for Gradient Array Coils with…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_kadence_starter_templates_imported_post":false,"_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"","_kad_post_sidebar_id":"","_kad_post_content_style":"","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"_kad_post_classname":"","footnotes":""},"class_list":["post-9","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/9","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=9"}],"version-history":[{"count":18,"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/9\/revisions"}],"predecessor-version":[{"id":422,"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/9\/revisions\/422"}],"wp:attachment":[{"href":"https:\/\/erginatalarlab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=9"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}